Rosetta errors?

Rosetta@home needs your help to determine the 3-dimensional shapes of proteins in research that may ultimately lead to finding cures for some major human diseases. Also covers RALPH (Rosetta Alpha).
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Jeffers
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Rosetta errors?

Post by Jeffers » Tue May 08, 2012 11:03 am

I'm getting computation errors on some, but not all, Rosetta WUs, see below


07/05/2012 23:45:39 | rosetta@home | Scheduler request completed: got 2 new tasks
07/05/2012 23:45:41 | rosetta@home | Started download of sh3_d310_design_036_fold_data.zip
07/05/2012 23:45:51 | rosetta@home | Finished download of sh3_d310_design_036_fold_data.zip
07/05/2012 23:45:51 | rosetta@home | Starting task sh3_d310_design_036_abinitio_SAVE_ALL_OUT_49587_795_0 using minirosetta version 330 in slot 2
07/05/2012 23:45:51 | rosetta@home | Starting task sh3_d310_design_036_abinitio_SAVE_ALL_OUT_49587_796_0 using minirosetta version 330 in slot 4
07/05/2012 23:50:07 | rosetta@home | Computation for task sh3_d310_design_036_abinitio_SAVE_ALL_OUT_49587_795_0 finished
07/05/2012 23:50:07 | rosetta@home | Output file sh3_d310_design_036_abinitio_SAVE_ALL_OUT_49587_795_0_0 for task sh3_d310_design_036_abinitio_SAVE_ALL_OUT_49587_795_0 absent
08/05/2012 00:15:31 | rosetta@home | Computation for task sh3_d310_design_036_abinitio_SAVE_ALL_OUT_49587_796_0 finished
08/05/2012 00:15:31 | rosetta@home | Output file sh3_d310_design_036_abinitio_SAVE_ALL_OUT_49587_796_0_0 for task sh3_d310_design_036_abinitio_SAVE_ALL_OUT_49587_796_0 absent
08/05/2012 09:38:04 | rosetta@home | Sending scheduler request: To fetch work.
08/05/2012 09:38:04 | rosetta@home | Reporting 2 completed tasks, requesting new tasks for CPU


I've tried resetting the project, which hasn't fixed it, any ideas?

This may have just started since the last BOINC update, I'm not sure when I noticed it, so I might try rolling back a version, see what happens....
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Jeffers
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Posts: 989
Joined: Mon Jul 24, 2006 1:00 am
Location: Halifax, West Yorks.

Post by Jeffers » Mon Jun 04, 2012 6:15 pm

I'm still getting these errors, has anybody any idea what's going on?

Latest errors;-

04/06/2012 15:41:55 | rosetta@home | Restarting task ab_11_29__optpps_T6241_optpps_03_09_35686_283803_1 using minirosetta version 331 in slot 2
04/06/2012 15:41:55 | rosetta@home | Restarting task ab_11_29__optpps_T6211_optpps_03_09_35686_290860_1 using minirosetta version 331 in slot 5
04/06/2012 15:41:55 | rosetta@home | Starting task rb_05_17_31371_62380_h004__t0673_IGNORE_THE_REST_06_12_50192_362_1 using minirosetta version 331 in slot 6
04/06/2012 16:30:12 | rosetta@home | Computation for task rb_05_17_31371_62380_h004__t0673_IGNORE_THE_REST_06_12_50192_362_1 finished
04/06/2012 16:30:12 | rosetta@home | Output file rb_05_17_31371_62380_h004__t0673_IGNORE_THE_REST_06_12_50192_362_1_0 for task rb_05_17_31371_62380_h004__t0673_IGNORE_THE_REST_06_12_50192_362_1 absent
04/06/2012 16:56:55 | rosetta@home | Computation for task ab_11_29__optpps_T6241_optpps_03_09_35686_283803_1 finished
04/06/2012 16:56:55 | rosetta@home | Output file ab_11_29__optpps_T6241_optpps_03_09_35686_283803_1_0 for task ab_11_29__optpps_T6241_optpps_03_09_35686_283803_1 absent
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UBT - Rick Horn
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Post by UBT - Rick Horn » Mon Jun 04, 2012 7:36 pm

I`m running 2 cores on my laptop with Rosetta and no problems, Jeff.

Jeffers
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Posts: 989
Joined: Mon Jul 24, 2006 1:00 am
Location: Halifax, West Yorks.

Post by Jeffers » Fri Jun 22, 2012 10:27 am

I've done a bit more digging and found some info on the Rosetta boards, see here ;- http://boinc.bakerlab.org/rosetta/forum ... hp?id=5945

It looks like they believe it's related to BOINC manager 7, so I've reverted to 6 for the moment, see what that does....
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